Family-based association test using normal approximation to gene dropping null distribution

نویسندگان

  • Yuan Jiang
  • Sarah Emerson
  • Lu Wang
  • Lujing Li
  • Yanming Di
چکیده

We derive the analytical mean and variance of the score test statistic in gene-dropping simulations and approximate the null distribution of the test statistic by a normal distribution. We provide insights into the gene-dropping test by decomposing the test statistic into two components: the first component provides information about linkage, and the second component provides information about fine mapping under the linkage peak. We demonstrate our theoretical findings by applying the gene-dropping test to the simulated data set from Genetic Analysis Workshop 18 and comparing its performance with existing population and family-based association tests.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

A New Approximation for the Null Distribution of the Likelihood Ratio Test Statistics for k Outliers in a Normal Sample

Usually when performing a statistical test or estimation procedure, we assume the data are all observations of i.i.d. random variables, often from a normal distribution. Sometimes, however, we notice in a sample one or more observations that stand out from the crowd. These observation(s) are commonly called outlier(s). Outlier tests are more formal procedures which have been developed for detec...

متن کامل

Gene Dropping Analysis of Founder Contributions and Allelic Diversity in an under Selected Population of Japanese Quails

The current study was conducted to consider how pedigree and the gene-dropping analysis can use to monitor genetic diversity, and to recommend a breeding strategy for improving breast weight (BRW) in a population of Japanese quail. A total of 312 birds were divided equally into two lines. One line (S1) was selected for four-week body weight (BW) based on breeding value, and the other (S2) was s...

متن کامل

EMPIRICAL NULL AND FALSE DISCOVERY RATE INFERENCE FOR EXPONENTIAL FAMILIES BY ARMIN SCHWARTZMAN1 Harvard School of Public Health and Dana-Farber Cancer Institute

In large scale multiple testing, the use of an empirical null distribution rather than the theoretical null distribution can be critical for correct inference. This paper proposes a “mode matching” method for fitting an empirical null when the theoretical null belongs to any exponential family. Based on the central matching method for z-scores, mode matching estimates the null density by fittin...

متن کامل

Empirical Null and False Discovery Rate Inference for Exponential Families

In large scale multiple testing, the use of an empirical null distribution rather than the theoretical null distribution can be critical for correct inference. This paper proposes a “mode matching” method for fitting an empirical null when the theoretical null belongs to any exponential family. Based on the central matching method for z-scores, mode matching estimates the null density by fittin...

متن کامل

Uniform Approximation Is More Appropriate for Wilcoxon Rank-Sum Test in Gene Set Analysis

Gene set analysis is widely used to facilitate biological interpretations in the analyses of differential expression from high throughput profiling data. Wilcoxon Rank-Sum (WRS) test is one of the commonly used methods in gene set enrichment analysis. It compares the ranks of genes in a gene set against those of genes outside the gene set. This method is easy to implement and it eliminates the ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره 8  شماره 

صفحات  -

تاریخ انتشار 2014